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metbit.spec_norm
NMR and preprocessing module in metbit 5.3.5.
import metbit.spec_normClasses
Normalization
A class for performing various normalization methods, including Probabilistic Quotient Normalization (PQN).
Methods:
pqn_normalization(df): Applies PQN normalization to the input dataframe.
Methods
__init__(self)
pqn_normalization(df)
Perform Probabilistic Quotient Normalization (PQN) on a dataframe.
Parameters:
dfpandas.DataFrame or numpy.ndarrayThe input data to normalize. Each column represents a feature.
Returns:
df_normpandas.DataFrameThe PQN normalized dataframe.
Raises:
TypeError: If input is not a pandas DataFrame or cannot be converted to one.
snv_normalization(df)
Standard Normal Variate (SNV) method
msc_normalization(df)
Multiplicative Scatter Correction (MSC) method
snv_msc_normalization(df)
SNV-MSC method
snv_pqn_normalization(df)
SNV-PQN method
snv_msc_pqn_normalization(df)
SNV-MSC-PQN method